convert example: agilent2pipe_1dΒΆ
This example shows how to use nmrglue to convert a 1D Agilent/Varian data set into a NMRPipe file.
The data used in this example is available for download.
#! /usr/bin/env python
import nmrglue as ng
# read in the Agilent data
dic, data = ng.varian.read('agilent_1d')
# Set the spectral parameters.
udic = ng.varian.guess_udic(dic, data)
udic[0]['size'] = 1500
udic[0]['complex'] = True
udic[0]['encoding'] = 'direct'
udic[0]['sw'] = 50000.0
udic[0]['obs'] = 125.681
udic[0]['car'] = 99.0*125.681
udic[0]['label'] = 'C13'
# create the converter object and load in Agilent data
C = ng.convert.converter()
C.from_varian(dic, data, udic)
# create NMRPipe data and then write it out
ng.pipe.write("1d_pipe.fid", *C.to_pipe(), overwrite=True)